Summary Statistics

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

Dynamic histogram of Read length

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Read lengths vs Average read quality plot using dots after log transformation of read lengths

Read lengths vs Average read quality plot using a kernel density estimation after log transformation of read lengths

NanoPlot report

Summary statistics

feature
General summary
Mean read length 4,449.3
Mean read quality 10.4
Median read length 3,890.0
Median read quality 11.2
Number of reads 692,758.0
Read length N50 5,373.0
STDEV read length 2,969.2
Total bases 3,082,258,211.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 641602 (92.6%) 2936.7Mb
>Q7 586625 (84.7%) 2711.9Mb
>Q10 454826 (65.7%) 2110.3Mb
>Q12 248406 (35.9%) 1141.7Mb
>Q15 522 (0.1%) 1.8Mb
Top 5 highest mean basecall quality scores and their read lengths
1 16.6 (1076)
2 16.6 (3428)
3 16.4 (636)
4 16.4 (2412)
5 16.3 (1502)
Top 5 longest reads and their mean basecall quality score
1 413847 (3.7)
2 336240 (3.4)
3 250929 (3.1)
4 229804 (6.7)
5 222146 (3.1)

Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





Dynamic histogram of Read length





Yield by length





Read lengths vs Average read quality plot using dots





Read lengths vs Average read quality plot using a kernel density estimation





Read lengths vs Average read quality plot using dots after log transformation of read lengths





Read lengths vs Average read quality plot using a kernel density estimation after log transformation of read lengths